Seagrass community structure as an indicator of ecosystem response on Pramuka Island

Authors

  • Aqilla Nur Fadia Department of Environmental Science, Graduate School of Sustainable Development, Universitas Indonesia, Central Jakarta, DKI Jakarta 10430, Indonesia
  • Evi Frimawaty Department of Environmental Science, Graduate School of Sustainable Development, Universitas Indonesia, Central Jakarta, DKI Jakarta 10430, Indonesia
  • Yuki Mahardhito Adhitya Wardhana Department of Environmental Science, Graduate School of Sustainable Development, Universitas Indonesia, Central Jakarta, DKI Jakarta 10430, Indonesia

DOI:

https://doi.org/10.61511/aes.v4i1.2026.3750

Keywords:

seagrass community, anthropogenic pressure, coastal ecosystem, Pramuka Island, carbon sequestration

Abstract

Background: Seagrass ecosystems are important blue carbon habitats but are increasingly threatened by anthropogenic activities. This study analyzed seagrass community structure and ecological responses across different levels of human pressure on Pramuka Island, Indonesia. Methods: A quantitative approach was employed using quadrat transects at 3 stations subjected to different pressure A quantitative field survey was conducted using quadrat transects at 3 stations. Seagrass species composition, cover, diversity, evenness, dominance, and Importance Value Index (IVI) were analyzed. Water quality was measured in situ, while carbon sequestration was estimated using literature-based coefficients. Findings: A total of 6 seagrass species were identified, with Thalassia hemprichii as the dominant species. Station 2 showed the highest dominance and lowest diversity, whereas Station 3 had the highest diversity despite the lowest seagrass cover. Overall seagrass cover remained below 30%, while estimated carbon sequestration ranged from 0.42 to 0.55 tons C ha⁻¹ year⁻¹. Similar water quality among stations suggests that differences in community structure were more strongly influenced by habitat characteristics and hydrodynamic conditions than by physicochemical factors. Conclusion: The findings indicate that seagrass community structure is a more sensitive indicator of ecosystem condition than seagrass cover alone. Integrating community structure with cover measurements can improve ecological assessments and support evidence-based management of seagrass ecosystems under varying anthropogenic pressures. Novelty/Originality of this article: This study demonstrates the value of biodiversity-based indicators alongside seagrass cover for assessing ecosystem condition and informing blue carbon and coastal conservation strategies.

References

Alongi, D. M., Murdiyarso, D., Fourqurean, J. W., Kauffman, J. B., Hutahaean, A., Crooks, S., Lovelock, C. E., Howard, J., Herr, D., Fortes, M., Pidgeon, E., & Wagey, T. (2016). Indonesia’s blue carbon: A globally significant and vulnerable sink for seagrass and mangrove carbon. Wetlands Ecology and Management, 24(1), 3–13. https://doi.org/10.1007/s11273-015-9446-y

Ambo-Rappe, R., Safitri, N., Garcia, A. S. A., Ananda, F., Armin, A., Munawwaroh, N. R., Selamat, M. B., Mashoreng, S., Lanuru, M., Widhah, S. F., La Nafie, Y. A., & Artika, S. R. (2025). Morphometric variability of seagrass species in a marine-protected area of Tomia Island. BIO Web of Conferences, 185, Artikel 02004. https://doi.org/10.1051/bioconf/202518502004

Angellica, Septiya, C. A., Klarisa, F. T., Mulyaningsih, L., Huzaifi, M., Reza, H., Safinatunnaja, N., Nuraulia, R., Putri, V. K., Dwi, A., Agustina, Rasyid, F. M., Razan, H. F., Kelana, S. A. (2024). Interspecific association of seagrass Enhalus acoroides with macrozoobenthos in seagrass meadow ecosystems in the eastern part of pramuka island. Marine Journal, 17(2), 138-151. 10.21107/jk.v17i2.25096

Assuyuti, Y. M., R. B. Zikrillah, M. A. Tanzil, A. Banata, & P. Utami. (2018). Distribution and types of marine debris and their relationship to the coral reef ecosystems of scout, Panggang, Air, and Kotok Besar Islands in the Thousand Islands of Jakarta. Biosfera a Scientific Journal, 35(2): 93.

Bockel, T., Deter, J., Holon, F., & Boissery, P. (2024). Quantifying the impact of small boats on Posidonia seagrass meadows: Methods and path for future efficient management of anchoring pressure. Ocean & Coastal Management, 259, 107454. https://doi.org/10.1016/j.ocecoaman.2024.107454

Chang, Y. E., Liao, C. H., Hsieh, H. H., Abedneko, V. G., Hung, C. C., & Lee, T. M. (2024). Lateral carbon export of macroalgae and seagrass from diverse habitats contributes particulate organic carbon in the deep sea of the Northern South China Sea. Marine Pollution Bulletin, 206, 116672.

Duarte, C. M. (1991). Seagrass depth limits. Aquatic Botany, 40(4), 363–377. https://doi.org/10.1016/0304-3770(91)90081-F

Duarte, C. M., Middelburg, J. J., & Caraco, N. (2005). Major role of marine vegetation on the oceanic carbon cycle. Biogeosciences, 2(1), 1–8. https://doi.org/10.5194/bg-2-1-2005

Gao, Y., Zhao, Z., Zhang, Y., & Liu, J. (2021). Response of abiotic soil CO₂ flux to the difference in air-soil temperature in a desert. Science of the Total Environment, 785, 147377

Hernawan, U. E., Rahmawati, S., Ambo-Rappe, R., Sjafrie, N. D. M., Hadiyanto, H., Yusup, D. S., Nugraha, A. H., Nafie, Y. A., Adi, W., Prayudha, B., Irawan, A., Rahayu, Y. P., Ningsih, E., Riniatsih, I., Supriyadi, I. H., & McMahon, K. (2021). The first nation-wide assessment identifies valuable blue-carbon seagrass habitat in Indonesia is in moderate condition. Science of The Total Environment, 782, Artikel 146818. https://doi.org/10.1016/j.scitotenv.2021.146818

Hertyastuti, P. R., Putra, R. D., Apriadi, T., Suhana, M. P., Idris, F., & Nugraha, A. H. (2020). Estimation of carbon storage in the seagrass meadows ecosystem of Dompak and Berakit Waters, Riau Islands. Jurnal Ilmu dan Teknologi Kelautan Tropis, 12(3), 849–862. https://doi.org/10.29244/jitkt.v12i3.32199

Hidayati, N. (2019). Valuation of seagrass ecosystem services in the Thousand Islands. Universitas Indonesia.

Infantes, E., Hoeks, S., Adams, M. P., van der Heide, T., van Katwijk, M. M., & Bouma, T. J. (2022). Seagrass roots strongly reduce cliff erosion rates in sandy sediments. Marine Ecology Progress Series, 700, 1-12.

Jalaludin, M., Octaviyani, I, N., Putri, A, N, P., Octaviyani, W., Aldiansyah, I. (2020). Seagrass meadows as an ecosystem supporting marine life on Pramuka Island, Thousand Islands, Indonesia. Geography Gea Journal, 20(1), 45-51. https://doi.org/10.17509/gea.v20i1.22749

James, R. K., Christianen, M. J. A., van Katwijk, M. M., de Smit, J. C., Bakker, E. S., Herman, P. M. J., & Bouma, T. J. (2020). Seagrass coastal protection services reduced by invasive species expansion and megaherbivore grazing. Journal of Ecology, 108(5), 2025–2037. https://doi.org/10.1111/1365-2745.13411

Kaddoura, M. F., & Wright, N. C. (2022). Optimization of convection-enhanced evaporation (CEE) using generalized cost ratios. Water Research, 219, 118491.

Kennedy, H., Pagès, J. F., Lagomasino, D., Arias-Ortiz, A., Colarusso, P., Fourqurean, J. W., Githaiga, M. N., Howard, J. L., Krause-Jensen, D., Kuwae, T., Lavery, P. S., Macreadie, P. I., Marbà, N., Masqué, P., Mazarrasa, I., Miyajima, T., Serrano, O., & Duarte, C. M. (2022). Species traits and geomorphic setting as drivers of global soil carbon stocks in seagrass meadows. Global Biogeochemical Cycles, 36(10), Artikel e2022GB007481. https://doi.org/10.1029/2022GB007481

Khairunnisa, A., Riani, E., & Dewi, M. (2024). Tourist perceptions of seagrass ecosystems in the coastal tourism area of Bintan Regency. Aurelia Journal, 5(1), 33–42. https://doi.org/10.15578/aj.v6i1.12639

Khairunnisa, K., Yuda, A. O., Haidawati, H., Arkham, M. N. (2024). Travelers' perceptions of seagrass ecosystems in the coastal tourism area of Bintan Regency, Riau Islands. Aurelia Journal, 6(1), 01-12.

Krause, J. R., Chroeng, C., Glue, M., Mesa, L., Ngoun, T., Tak, C., Bayley, D. T., & Fourqurean, J. W. (2025). The influence of seagrass traits and environmental controls on soil organic carbon stocks in Chrouy Pros Bay, Cambodia. Science of The Total Environment, 993, 180000.

Lahope, E, P., Kumampung, D, R, H., Sondak, C, F, A., Kusen, J, D., Warouw, V., Kondoy, C, I, F. (2022). Seagrass condition in the waters of Ponto Village, Wori Sub-district, North Minahasa Regency. Journal of Tropical Coastal and Marine, 10(3), 246-253. https://doi.org/10.35800/jplt.10.3.2022.55009

Li, Y., Zhang, X., & Wang, L. (2024). Assessment of the community status of seagrass bed and its environmental characteristics in Wenchang, China. Frontiers in Marine Science, 11, 1433104. https://doi.org/10.3389/fmars.2024.1433104

Lincoln, S., Vannoni, M., Benson, L., Engelhard, G. H., Tracey, D., Shaw, C., & Molisa, V. (2021). Assessing intertidal seagrass beds relative to water quality in Vanuatu,

South Pacific. Marine Pollution Bulletin, 163, 111936.

Liu, S., Luo, H., Jiang, Z., Ren, Y., Zhang, X., Wu, Y., Huang, X., & Macreadie, P. I. (2023). Nutrient loading weakens seagrass blue carbon potential by stimulating seagrass detritus carbon emission. Ecological Indicators, 157, 111251.

Macreadie, P. I., Costa, M. D. P., Atwood, T. B., Friess, D. A., Kelleway, J. J., Kennedy, H., Lovelock, C. E., Serrano, O., & Duarte, C. M. (2021). Blue carbon as a natural climate solution. Nature Reviews Earth & Environment, 2(12), 826–839. https://doi.org/10.1038/s43017-021-00224-1

Magurran, A. E. (1988). Ecological Diversity and Its Measurement. Princeton University Press.

Manca, F., Benedetti-Cecchi, L., Bradshaw, C. J. A., Cabeza, M., Gustafsson, C., Norkko, A. M., Roslin, T. V., Thomas, D. N., White, L., Strona, G. (2024). Projected loss of brown macroalgae and seagrasses with global environmental change. Nat Commun, 15(5344), 1-12. https://doi.org/10.1038/s41467-024-48273-6

McKenzie, L. J., Nordlund, L. M., Jones, B. L. H., Cullen-Unsworth, L. C. (2020). The global distribution of seagrass meadows. IOP Publishing Environmental Research Letters, 15(7), 1-13. https://doi.org/10.1088/1748-9326/ab7d06

McKenzie, L. J., Campbell, S. J., & Roder, C. A. (2003). Seagrass-Watch: Manual for mapping & monitoring seagrass resources by community (citizen) volunteers (2nd ed.). Northern Fisheries Centre.

Muhammad, I. F., Riniatsih, I., & Suryono, C. A. (2025). Seagrass ecosystem health index at Mrican Beach and Babakan Kulon Beach, Kemujan, Karimunjawa National Park. Journal of Marine Research, 14(1), 96–104. https://doi.org/10.14710/jmr.v14i1.42597

Needelman, B. A., Emmer, I. M., Emmett-Mattox, S., Crooks, S., Megonigal, J. P., Myers, D., Oreska, M. P. J., & McGlathery, K. (2018). The science and policy of the verified carbon standard methodology for tidal wetland and seagrass restoration. Estuaries and Coasts, 41(8), 2159–2171. https://doi.org/10.1007/s12237-018-0429-0

Nugraha, A. H., Tasabaramo, I. A., Hernawan, U. E., Rahmawati, S., Putra, R. D., & Idris, F. (2020). Carbon stock estimation in seagrass ecosystems in northern Papua waters (Case Study: Liki Island, Befondi Island and Meossu Island). Journal of Tropical Marine, 23(3), 291–298. https://doi.org/10.14710/jkt.v23i3.7939

Nordlund, L. M., & Gullström, M. (2013). Biodiversity loss in seagrass meadows due to local invertebrate fisheries and harbour activities. Estuarine, Coastal and Shelf Science, 135, 231–236. https://doi.org/10.1016/j.ecss.2013.10.019

Nordlund, L. M., Unsworth, R. K., Gullström, M., & Cullen‐Unsworth, L. C. (2018). Global significance of seagrass fishery activity. Fish and Fisheries, 19(3), 399-412.

Odum, E. P. (1971). Fundamentals of Ecology (3rd ed.). W. B. Saunders.

Olive, I., García-Robledo, E., Silva, J., Pintado-Herrera, M. G., Santos, R., Kamenos, N. A., Cuet, P., & Frouin, P. (2022). Contribution of the seagrass Syringodium isoetifolium to the metabolic functioning of a tropical reef lagoon. Frontiers in Marine Science, 9, 867986.

Pelafu, R, E, P., Wagey, B, T., Paruntu, C, P., Tilaar, S, O., Windarto, A, B., Tilaar, F. (2022). Seagrass community structure in Bulutui Waters, West Likupang District, North Minahasa Regency. Journal of Tropical Coastal and Marine, 10(2), 110-122. https://doi.org/10.35800/jplt.10.2.2022.54974

Pielou, E. C. (1977). Mathematical Ecology. Wiley-Interscience.

Potouroglou, M., Whitlock, D., Milatovic, L., MacKinnon, G., Kennedy, H., Diele, K., & Huxham, M. (2021). The sediment carbon stocks of intertidal seagrass meadows in Scotland. Estuarine, Coastal and Shelf Science, 258, 107442.

Prayogo, B. P., Idris, F., & Nugraha, A. H. (2021). Growth and biomass production of seagrass Thalassia hemprichii in coastal Bintan Island. Journal of Marine Science Islands, 4(2), 425–434. https://doi.org/10.33387/jikk.v4i2.3882

Qi, W., Jiang, Z., Long, X., Liu, Y., Fang, Y., Egodauyana, U. T., Chen, X., Liu, S., Wu, Y., & Huang, X. (2024). The metabolic network response and tolerance mechanism of Thalassia hemprichii under high sulfide based on widely targeted metabolome and transcriptome. Science of The Total Environment, 951, p.175702.

Rahayu, Y. P., Solihuddin, T., Kusumaningtyas, M. A., Afi Ati, R. N., Salim, H. L., Rixen, T., & Hutahaean, A. A. (2019). The sources of organic matter in seagrass sediments and their contribution to carbon stocks in the Spermonde Islands, Indonesia. Aquatic Geochemistry, 25(3), 161–178. https://doi.org/10.1007/s10498-019-09358-7

Rasmusson, L. M., Buapet, P., George, R., Gullstrom, M., Gunnarsson, P. C. B., Bjork, M. (2020). Effects of temperature and hypoxia on respiration, photorespiration, and photosynthesis of seagrass leaves from contrasting temperature regimes. ICES Journal of Marine Science, 77(6), 2056-2065. https://doi.org/10.1093/icesjms/fsaa093

Rasyid, N., Munir. Andryan, D., bengen, D. G., Subhan, B. (2022). Assessment of marine debris in seagrass beds of Pramuka Island, Thousand Islands. IOP Conf. Series: Earth and Environmental Science, 967 012014. https://doi.org/10.1088/1755-1315/967/1/012014

Ren, Y., Liu, S., Luo, H., Jiang, Z., Liang, J., Wu, Y., Huang, X., & Macreadie, P. I. (2024). Seagrass decline weakens sediment organic carbon stability. Science of the Total Environment, 937, 173523.

Rifai, H., Hernawan, U. E., Zulpikar, F., Sondakh, C. F. A., Ambo-Rappe, R., Sjafrie, N. D. M., Irawan, A., Dewanto, H. Y., Rahayu, Y. P., Reenyan, J., Safaat, M., Alifatri, L. ode, Rahmawati, S., Hakim, A., Rusandi, A., & Wawo, M. (2022). Strategies to improve management of Indonesia’s blue carbon seagrass habitats in marine protected areas. Coastal Management, 50(2), 93–105. https://doi.org/10.1080/08920753.2022.2022948

Rifai, H., Santoso, A., & Lestari, D. (2023). Understanding community awareness of seagrass ecosystem services for their blue carbon conservation strategies in Karimunjawa National Park. Ecological Research, 38(3), 541–552. https://doi.org/10.1111/1440-1703.12391

Risandi, J., Rifai, H., Lukman, K. M., Sondak, C. F. A., Hernawan, U. E., Quevedo, J. M. D., Hidayat, R., Ambo-Rappe, R., Lanuru, M., McKenzie, L., Kohsaka, R., & Nadaoka, K. (2023). Hydrodynamics across seagrass meadows and its impacts on Indonesian coastal ecosystems: A review. Frontiers in Earth Science, 11, Artikel 1034827. https://doi.org/10.3389/feart.2023.1034827

Risqiani, A., Suprapto, D., & Purwanti, F. (2020). Analysis of the suitability of tourism demand and tourism object supply in the Thousand Islands National Park (case in Pramuka Island), Jakarta. Indonesian Journal of Fisheries Science and Technology Available, 16(1), 72–78. http://ejournal.undip.ac.id/index.php/saintek

Rustam, A. (2019). Seagrass ecosystem monitoring of Pari Island and Pulau Tikus. Jakarta Research Journal, 12(1), 7–15. https://doi.org/10.37439/jurnaldrd.v12i1.3

Serrano, O., Ruhon, R., Lavery, P. S., Kendrick, G. A., Hickey, S., Masqué, P., Arias-Ortiz, A., Steven, A., & Duarte, C. M. (2016). Impact of mooring activities on carbon stocks in seagrass meadows. Scientific Reports, 6(1), Artikel 23193. https://doi.org/10.1038/srep23193

Setyawan, S. A., Mutiasari, N. R., Ramadhanti, Z. N., Suryanda, A. (2021). Association between seagrasses and gastropods. Journal of Ecology, Society & Science, 2(2), 66-70. https://doi.org/10.55448/ems

Silvi, M. V., Redjeki, S., & Riniatsih, I. (2022). Nutrient Content of Sediment in Seagrass Ecosystems in Awur Bay and Long Island, Jepara. Journal of Marine Research, 11(3), 420–428. https://doi.org/10.14710/jmr.v11i3.32219

Shi, Z., Shi, Y., Zhao, M., Wang, K., Ma, S., & Han, Q. (2025). Thalassia hemprichii may benefit from ocean acidification and slightly increased salinity in the future. Marine Environmental Research, 205, 107000.

Sholihah, H., Arthana, I. W., & Ekawaty, R. (2020). Relationship between macrozoobenthos diversity and seagrass density at Semawang Beach, Sanur Bali. Current Trends in Aquatic Science, 3(1), 1–7.

Short, F. T., Polidoro, B., Livingstone, S. R., Carpenter, K. E., Bandeira, S., Bujang, J. S., Calumpong, H. P., Carruthers, T. J. B., Coles, R. G., Dennison, W. C., Erftemeijer, P. L. A., Fortes, M. D., Freeman, A. S., Jagtap, T. G., Kamal, A. H. M., Kendrick, G. A., Judson Kenworthy, W., La Nafie, Y. A., Nasution, I. M., Zieman, J. C. (2011). Extinction risk assessment of the world’s seagrass species. Biological Conservation, 144(7), 1961–1971. https://doi.org/10.1016/j.biocon.2011.04.010

Sjafrie, N. D., Hernawan, U. E., Prayudha, B., Supriyadi, I. H., Iswari, M. Y., Rahmat, K. A., & Suyarso, S. R. (2018). Status of Indonesian Seagrass Meadows 2018 Ver. 02. Jakarta: Center for Oceanographic Research of Indonesian Institute of Sciences Puslit Oceanografi.

Stankovic, M., Ambo-Rappe, R., Carly, F., Dangan-Galon, F., Fortes, M. D., Hossain, M. S., Van Kiswara, W., Luong, C., Minh-Thu, P., Mishra, A. K., Noiraksar, T., Nurdin, N., Panyawai, J., Rattanachot, E., Rozaimi, M. S., Htun, U., & Prathep, A. (2021). Quantification of blue carbon in seagrass ecosystems of Southeast Asia and their potential for climate change mitigation. Science of The Total Environment, 783, Artikel 146858. https://doi.org/10.1016/j.scitotenv.2021.146858

Statistik, B. P. (2023). Marine and Coastal Resources Statistics 2023. Jakarta: BPS.

Sudo, K., Quiros, T. E. A. L., Prathep, A., Luong, C. V., Lin, H.-J., Bujang, J. S., Ooi, J. L. S., Fortes, M. D., Zakaria, M. H., Yaakub, S. M., Tan, Y. M., Huang, X., & Nakaoka, M. (2021). Distribution, temporal change, and conservation status of tropical seagrass beds in Southeast Asia: 2000–2020. Frontiers in Marine Science, 8, Artikel 637722. https://doi.org/10.3389/fmars.2021.637722

Thomsen, E., Herbeck, L. S., & Jennerjahn, T. C. (2020). The end of resilience: Surpassed nitrogen thresholds in coastal waters led to severe seagrass loss after decades of exposure to aquaculture effluents. Marine Environmental Research, 160, Artikel 104986. https://doi.org/10.1016/j.marenvres.2020.104986

Unsworth, R. K. F., Collier, C. J., Waycott, M., McKenzie, L. J., & Cullen-Unsworth, L. C. (2018). A global assessment of the status of seagrass ecosystems: Threats, protection, and management. Marine Pollution Bulletin, 134, 1–11. https://doi.org/10.1016/j.marpolbul.2018.03.011

Unsworth, R. K. F., McKenzie, L. J., Collier, C. J., Cullen-Unsworth, L. C., Duarte, C. M., Eklöf, J. S., Jarvis, J. C., Jones, B. L., & Nordlund, L. M. (2019). Global challenges for seagrass conservation. Ambio, 48(8), 801–815. https://doi.org/10.1007/s13280-018-1115-y

Vanderklift, M. A., Herr, D., Lovelock, C. E., Murdiyarso, D., Raw, J. L., & Steven, A. D. L. (2022). A guide to international climate mitigation policy and finance frameworks relevant to the protection and restoration of blue carbon ecosystems. Frontiers in Marine Science, 9, Artikel 872064. https://doi.org/10.3389/fmars.2022.872064

Valdez, S. R., Zhang, Y. S., van der Heide, T., Vanderklift, M. A., Tarquinio, F., Orth, R. J., & Silliman, B. R. (2020). Positive ecological interactions and the success of seagrass restoration. Frontiers in Marine Science, 7, 91. https://doi.org/10.3389/fmars.2020.00091

vonHoldt, B. M., & Aardema, M. L. (2020). Updating the bibliography of interbreeding among Canis in North America. Journal of Heredity, 111(3), 249–262. https://doi.org/10.1093/jhered/esaa004

Wahyudi, A. A. J., Rahmawati, S., Irawan, A., Hadiyanto, H., Prayudha, B., Hafizt, M., Afdal, A., Adi, N. S., Rustam, A., Hernawan, U. E., & Kiswara, W. (2020). Assessing carbon stock and sequestration of the tropical seagrass meadows in Indonesia. Ocean Science Journal, 55(1), 85-97.

Zamani, N. P., Prartono, T., Arman, A., Ariesta, D. S., & Wahab, I. (2018). Concentration of heavy metals in the roots, stems, and leaves of Enhalus acoroides on Tunda Island, Banten Bay. Journal of Tropical Marine Science and Technology, 10(3), 769–784.

Zhang, Y., Liu, H., & Chen, J. (2024). Effects of environmental changes on vegetation growth and community structure in seagrass meadows. Marine Environmental Research, 195, 106123. https://doi.org/10.1016/j.marenvres.2024.106123

Zhou, Q., Li, M., & Sun, Y. (2024). Reduced seagrass resilience due to environmental and anthropogenic stressors. Frontiers in Marine Science, 11, 1366939. https://doi.org/10.3389/fmars.2024.1366939

Published

2026-07-28

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Fadia, A. N., Frimawaty, E., & Wardhana, Y. M. A. (2026). Seagrass community structure as an indicator of ecosystem response on Pramuka Island. Applied Environmental Science, 4(1). https://doi.org/10.61511/aes.v4i1.2026.3750

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